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MicroPC publication |
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Wuttichai Mhuantong and Duangdao Wichadakul (2009), MicroPC (µPC): A comprehensive resource for predicting and comparing plant microRNAs, BMC Genomics, 10:366. [Abstract] [Full Text] [PDF] |
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Referenced plant EST sequences |
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Qunfeng Dong, Carolyn J. Lawrence, Shannon D. Schlueter, Matthew D. Wilkerson, Stefan Kurtz, Carol Lushbough, and Volker Brendel (2005),
Comparative Plant Genomics Resources at PlantGDB, Plant Physiology 139: 610-618. [Abstract] [Full Text] [PDF] |
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Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, and Volker Brendel (2008), PlantGDB: a resource for comparative plant genomics, Nucleic Acids Research (Database issue) 36: 959-965. [Abstract] [Full Text] [PDF] |
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Referenced plant mature miRNA sequences |
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Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. (2006), miRBase: microRNA sequences, targets and gene nomenclature, Nucleic Acids Research (Database issue) 34: 140-144. [Abstract] [Full Text] [PDF] |
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Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. (2008), miRBase: tools for microRNA genomics, Nucleic Acids Research (Database issue) 36: 154-158. [Abstract] [Full Text] [PDF] |
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Referenced approaches to identify potential miRNAs and their targets |
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Bao Hong Zhang, Xiao Ping Pan, Qing Lian Wang, George P. Cobb and Todd A. Anderson (2005), Identification and characterization of new plant microRNAs using EST analysis, Cell Research 15(5): 336-360. [Abstract] [Full Text] [PDF] |
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Baohong Zhang, Xiaoping Pan, Charles H. Cannon, George P. Cobb and Todd A. Anderson (2006), Conservation and divergence of plant microRNA genes, The Plant Journal 46: 243–259.[Abstract] [Full Text] [PDF] |
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Baohong Zhang, Xiaoping Pan, Qinglian Wang, George P. Cobb and Todd A. Anderson (2007), Computational identification of microRNAs and their targets, Computational Biology and Chemistry 30: 395–407. [Full Text] |
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B. H. Zhang , X. P. Pan, S. B. Cox, G. P. Cobb and T. A. Anderson (2006), Evidence that miRNAs are different from other RNAs, Cellular and Molecular Life Sciences 63: 246-254.[Abstract] |
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Referenced tool to predict miRNA secondary structure |
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Markham, N. R. & Zuker, M. (2008) UNAFold: software for nucleic acid folding and hybriziation. In Keith, J. M., editor, Bioinformatics, Volume II. Structure, Functions and Applications, number 453 in Methods in Molecular Biology, chapter 1, pages 3–31. Humana Press, Totowa, NJ. ISBN 978-1-60327-428-9. |
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